PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9KG371000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 704aa    MW: 75462.7 Da    PI: 8.0323
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9KG371000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS290.15.8e-8930470215374
                 GRAS  15 gdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl.fsevsPilkfshltaNqaIl 103
                          +  +++q+l++ l+elasp+gd  q+la+yf+++L arl++s++++ ++l++ ++++  s e++  + l f+e+sP+  f+h++aN aIl
  Pavir.9KG371000.1.p 304 EVSQRVQQLMWMLNELASPYGDVDQKLASYFLQGLFARLTSSGPRTLRTLAAASDRN-ASFESTRRTALkFQELSPWASFGHVAANGAIL 392
                          55789*********************************************9888874.444444444446******************** PP

                 GRAS 104 eavege............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                          ea+ ++             r+Hi+D++ + ++QWp+Ll+aLa+R+ +++p+l iT+v+++++      ++ ++e+ +rL+kfA+ +gvpf
  Pavir.9KG371000.1.p 393 EAFLEAaaaaasssssqpPRLHILDLSNTFCTQWPTLLEALATRSsDDTPHLSITTVVPAAAPasaaAQRVMREITQRLEKFARLMGVPF 482
                          **9776666677777777789************************8889********9976657888999******************** PP

                 GRAS 177 efnvlvak.rledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........... 251
                          +f+++++  +l++l+l+ L++++     alaVn+v +l  +   ++  +  rd+++  +++l+P+vv+vve++ad+  +           
  Pavir.9KG371000.1.p 483 SFRAVHHAgDLAELDLDGLDLREggaTTALAVNCVNALRGVA--PGGARR-RDAFVASLRRLEPRVVTVVEEDADLVPPdpgaastseea 569
                          ****97767**************888889************8..555555.9*********************999555578999999** PP

                 GRAS 252 ......sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++ f e l+++sa +dsle+++p++s+er  +Er+  gr+iv++v+c  +e+ er+et ++W +r+++aGF+pv++s+++a+
  Pavir.9KG371000.1.p 570 gaddaaAFMKVFEEGLRFFSAYMDSLEESFPKASNERLALERA-AGRAIVDLVSCPASESAERRETGASWARRMRSAGFSPVAFSDDVAD 658
                          *******************************************.********************************************** PP

                 GRAS 336 qaklllrkvksdgyrveee......sgslvlgWkdrpLvsvSaWr 374
                          ++++llr++  +g++++e        + ++l Wk++p+v++SaWr
  Pavir.9KG371000.1.p 659 DVRSLLRRYR-EGWTLQEPgtddaaAAGVFLAWKEQPVVWTSAWR 702
                          *********9.99****7666666577788**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.881264677IPR005202Transcription factor GRAS
PfamPF035142.0E-86304702IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MDTLFRLVSL HQHHHHPQAP SSPDQQQRHH QSPYNSRSTS RSTTSTGSRS SPGSHRTHNH  60
HYYPHSHYTS SSSYYYCDPA AGAGGYYYDH HQPAPYQQEC GSDHGGFYMD EDFSSSSSPS  120
RHFHHQPSSA APPASSPAPT PPPPPPPAPS SASAGGHAAL LEAADFSFPQ VDIDLDFGSP  180
AASSSGGSGA AAAGGAGRWA AQLLLECARA VAKISERHPR GRPARATRHH LGHQPRRAKI  240
TPSTLHALAG RNSLHRRASP SLPRLAARRG LTEGGEEGRR WRGVTLGRGK EGGGARRVAA  300
AGAEVSQRVQ QLMWMLNELA SPYGDVDQKL ASYFLQGLFA RLTSSGPRTL RTLAAASDRN  360
ASFESTRRTA LKFQELSPWA SFGHVAANGA ILEAFLEAAA AAASSSSSQP PRLHILDLSN  420
TFCTQWPTLL EALATRSSDD TPHLSITTVV PAAAPASAAA QRVMREITQR LEKFARLMGV  480
PFSFRAVHHA GDLAELDLDG LDLREGGATT ALAVNCVNAL RGVAPGGARR RDAFVASLRR  540
LEPRVVTVVE EDADLVPPDP GAASTSEEAG ADDAAAFMKV FEEGLRFFSA YMDSLEESFP  600
KASNERLALE RAAGRAIVDL VSCPASESAE RRETGASWAR RMRSAGFSPV AFSDDVADDV  660
RSLLRRYREG WTLQEPGTDD AAAAGVFLAW KEQPVVWTSA WRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-1732070233375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270150.0KJ727015.1 Zea mays clone pUT3996 GRAS transcription factor (GRAS58) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467655.10.0hypothetical protein SORBIDRAFT_01g031720
RefseqXP_004983931.10.0PREDICTED: protein SHORT-ROOT 2-like
SwissprotQ8H2X80.0SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLA0A0A9PAB90.0A0A0A9PAB9_ARUDO; Uncharacterized protein
TrEMBLK4A6Z70.0K4A6Z7_SETIT; Uncharacterized protein
STRINGSi034653m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35263781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.11e-131GRAS family protein